MRIQC: individual T1w report

Summary

  • BIDS filename: sub-1001_T1w.
  • Date and time: 2020-01-13, 17:42.
  • MRIQC version: 0.15.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.542025899645777
cnr2.465493652773259
efc0.561993883301037
fber2317.697998046875
fwhmavg3.7297766666666665
fwhmx3.74722
fwhmy3.71273
fwhmz3.72938
icvscsf0.2096595413653726
icvsgm0.4317415471014008
icvswm0.3585989115332266
inumed1.5501112937927246
inurange0.5728546261787415
qi10.0
qi20.002361193200320595
rpvecsf24.894964291299587
rpvegm12.889016588756162
rpvewm18.695360913360474
sizex192
sizey224
sizez224
snrcsf2.485679679583647
snrgm9.959321937847054
snrtotal10.83548361081015
snrwm20.06144921499975
snrdcsf30.61438169827736
snrdgm68.03177735296546
snrdtotal62.30562483522036
snrdwm88.27071545441825
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk10.006992755306868
summarybgmad7.4221110343933105
summarybgmean15.658178329467773
summarybgmedian12.065792083740234
summarybgn2870149.0
summarybgp054.627376461029051
summarybgp9541.488623046875006
summarybgstdv13.239250183105469
summarycsfk6.316429023301255
summarycsfmad151.6378936767578
summarycsfmean366.2561340332031
summarycsfmedian346.8336486816406
summarycsfn10289.0
summarycsfp05184.0487030029297
summarycsfp95600.5640991210939
summarycsfstdv139.52593994140625
summarygmk-0.2032150495340601
summarygmmad79.75543212890625
summarygmmean772.4212036132812
summarygmmedian770.7393798828125
summarygmn22644.0
summarygmp05649.8838684082032
summarygmp95904.2744079589843
summarygmstdv77.38703155517578
summarywmk1.024999616409752
summarywmmad44.525211334228516
summarywmmean1003.0806274414062
summarywmmedian1000.0285034179688
summarywmn165615.0
summarywmp05926.1541381835937
summarywmp951088.084423828125
summarywmstdv49.84811782836914
tpmoverlapcsf0.21700604259967804
tpmoverlapgm0.507818877696991
tpmoverlapwm0.5406711101531982
wm2max0.666930911566521
AcquisitionMatrixPE224
AcquisitionNumber1
AcquisitionTime13:43:36.270000
BaseResolution224
BodyPartExaminedBRAIN
CoilStringHE2_4;NE2
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20190410 GCC6.3.0
DeviceSerialNumber166048
DwellTime1.06e-05
EchoTime0.00217
FlipAngle8
ImageOrientationPatientDICOM[0.0331552, 0.99945, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'FM3', '2', 'FIL']
ImagingFrequency123.246
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressNorth_13th_1701_Philadelphia_PA_US_19122
InstitutionNameTemple_University_-_Weiss_Hall
InstitutionalDepartmentNameDepartment
InversionTime1.15
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PhaseEncodingSteps223
PhaseResolution1
PixelBandwidth210
ProcedureStepDescriptionSmith_Lab_Smith_iStart
ProtocolNameT1w-anat_mpg_07sag_iso
PulseSequenceDetails%SiemensSeq%_tfl
ReceiveCoilActiveElementsHE2,4;NE2
ReceiveCoilNameHeadNeck_20
ReconMatrixPE224
RefLinesPE32
RepetitionTime2.4
SAR0.0362638
ScanOptionsIR_WE
ScanningSequenceGR_IR
SequenceName_tfl3d1_16ns
SequenceVariantSK_SP_MP
SeriesDescriptionT1w-anat_mpg_07sag_iso
SeriesNumber3
ShimSetting[1404, -7455, 6371, 500, 74, -242, -78, 50]
SliceThickness1
SoftwareVersionssyngo_MR_E11
StationNameAWP166048
TxRefAmp245.43
md5sum8fe057f09d2cda6fb68fea2236aeb1df
softwaremriqc
version0.15.1
Rate Image
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.